G_rmsf manual

g_rmsf computes the root mean square fluctuation (RMSF, i.e. standard deviation) of atomic positions in the trajectory (supplied with -f) after (optionally) fitting to a reference frame (supplied with -s). With option -oq the RMSF values are converted to B-factor values, which are written to a. pdb file with the coordinates, of the structure file, or of a. pdb file when -q is specified. g_rmsf calculate the per-residue root mean square fluctuations g_gyrate calculate the radius of gyration g_dist, g_mindist. calculate the distance between atoms or groups of atoms (make a index file with make_ndx to define the groups of interest). g_mindist is especially useful to find water molecules close to a region of interest. Symptoms and Signs of RMSF. The incubation period for Rocky Mountain spotted fever averages 7 days but varies from 3 to 12 days; the shorter the incubation period, the more severe the infection. Onset is abrupt, with severe headache, chills, prostration, and muscular pains. Fever reaches to 40 ° C within several days and remains high (for.

g_rmsf computes the root mean square fluctuation (RMSF, i.e. standard deviation) of atomic positions in the trajectory (supplied with -f) after (optionally) fitting to a reference frame (supplied with -s). With option -oq the RMSF values are converted to B-factor values, which are written to a. pdb file with the coordinates, of the structure. RMSF和RMSD都是表征结构变化的量, 两者方程相似, 功能相似. 区别在于RMSD是对原子总数的平均, RMSF是对时间的平均. 在GROMACS中, g_rms得到的是随时间变化的曲线, g_rmsf得到的是随原子序号变化的曲线(可使用-res选项得到随氨基酸残基变化的曲线). 与g_covar类似, g_rmsf也可. _grmsf www.doorway.ru -f www.doorway.ru -o www.doorway.ru 该命令可以得到每一个原子的结构位置涨落（也就是震动的构象变化）。 _grmsf也可以计算平均结构： _g_rms -s www.doorway.ru -f www.doorway.ru -ox www.doorway.ru -b -e 以上既是求ps到ps的估计平均结构，可以与上文使用_g_covar_求平均结构进行.

29 авг. г. g_rmsf computes the root mean square fluctuation (RMSF, i.e. standard deviation) of atomic positions in the trajectory (supplied with -f). the Genome Walking kit (TaKaRa) according to the manufacturer's instructions. ensemble of the last 20 ps using the Gromacs g_rmsf utility (17, 30). Don't be afraid to use the Gromacs online manual, to search in the Gromacs mailing list The RMSF (and the average structure) are calculated with g_rmsf.